miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|74114246|gb|DT603101.1|DT603101 CTAGAGCCAGTCATCTAAAACAGTTCAGGGTAATGGCGATGGCGGAAGCTGCAAGGAAACCCCCGGCGATTCCTCCTCCT
ATGCCTCCCAACGGCGGGAAGTTCAAGATAGGATTGTGCCAGCTCAAAGTAACAGCGGACAAGCAGAGAAATATAGATCA
TGCCTGCGCCGCTATCGAGGAGGCTGCTGATAAAGGCGCTCAGCTCGTTATGTTGCCTGAAATTTGGAATGGTCCCTATT
CAAATGAAAGTTTTCCAGTGTATGCTGAAGATATAGATGCTGGTGGTAATTCATCCCCTTCAACCTTAATGCTTTCTGAA
GTTGCACGCAGGAAAGGCATAACAATTATAGGAGGATCAATATCTGAACGTAGTGGAGAGGCCCTCTACAATACATGCTG
CGTTTTTGGTAAAGATGGAGAGTTGAAGGGGAAGCACAGGAAGATTCACCTTTTTGACATCGACATACCAGGGAAGATCT
CATTTAAAGAATCTAAAACACTGACAGCTGGAAACAGCCCAACTGTGGTTGATACAGATGTGGGACGCATTGGTGTTGGA
ATCTGTTATGATATGAGGTTTCAAGAATTAGCCATGTTATATGCAGCAAGAGGTGCCCACCTCATATGCTATCCAGGAGC
ATTCAATATGACTACTGGACCACTTCACTGGGAACTTCTACAGAGAGCAAGAGCAGCAGATAACCAGCTGTATGTTGCCA
CTTGTTCACCTGCTCGTGACACAGAAGCAGGTTATGTAGCTTGGGGGCATTCCACTCTGGTTGGACCGTTTGG




Most similar to sp|Q497B0|NIT2_RAT

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
           PE=1 SV=1
          Length = 276

 Score =  282 bits (722), Expect = 2e-75
 Identities = 140/230 (60%), Positives = 166/230 (72%)
 Frame = +3

Query: 102 FKIGLCQLKVTADKQRNIDHACAAIEEAADKGAQLVMLPEIWNGPYSNESFPVYAEDIDA 281
           F++ L QL+V++ K  NI  AC+ + EAA +GA +V LPE +N PY    FP YAE I  
Sbjct: 4   FRLALIQLQVSSIKSDNITRACSLVREAAKQGANIVSLPECFNSPYGTNYFPEYAEKIPG 63

Query: 282 GGNSSPSTLMLSEVARRKGITIIGGSISERSGEALYNTCCVFGKDGELKGKHRKIHLFDI 461
                 ST  LSEVA+   I +IGGSI E     LYNTC VFG DG L  KHRKIHLFDI
Sbjct: 64  -----ESTKKLSEVAKENSIYLIGGSIPEEDDGKLYNTCAVFGPDGNLLVKHRKIHLFDI 118

Query: 462 DIPGKISFKESKTLTAGNSPTVVDTDVGRIGVGICYDMRFQELAMLYAARGAHLICYPGA 641
           D+PGKI+F+ESKTL+ G+S +  DT   R+G+GICYDMRF ELA +YA RG  L+ YPGA
Sbjct: 119 DVPGKITFQESKTLSPGDSFSTFDTPYCRVGLGICYDMRFAELAQIYARRGCQLLVYPGA 178

Query: 642 FNMTTGPLHWELLQRARAADNQLYVATCSPARDTEAGYVAWGHSTLVGPF 791
           FNMTTGP HWELLQRARA DNQ+YVAT SPARD +A YVAWGHST+V P+
Sbjct: 179 FNMTTGPAHWELLQRARAVDNQVYVATASPARDEKASYVAWGHSTVVDPW 228